PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003821-PA
Common NameOsI_02537
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 420aa    MW: 45440.7 Da    PI: 5.7028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003821-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.8e-14237284355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h + ErrRR+++N+ f  L++l+P+ +      K++Ka+iL +++ Y+k+L+
  BGIOSGA003821-PA 237 KNHVMSERRRREKLNEMFLILKSLVPSiD------KVDKASILSETIAYLKELE 284
                       5899***********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-201082IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.967234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-15237288No hitNo description
Gene3DG3DSA:4.10.280.104.6E-17238294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11238284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18238299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-16240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MCSFCPDGWQ SVPGKSFASN GCAWLCNAQS ADSKAFPRKL LAKNASIQTI VCVPFMTGVL  60
ELGTTDPVSE EPNVVNRITT AFWELQLPAC SDEPISSGTP SSPSSPPTKE TGDANTVVID  120
DLFLAHSDAI LPAGGDQKEE HQLGDDLGQQ QAATAMEIDD DVIYSLIRNW DNDSSSSWIE  180
LLDHAIVSPA SCFVPWKRTE LDKEAVAGGE AAQRLLKKVV GGGGAWMNRA AGSCSIKNHV  240
MSERRRREKL NEMFLILKSL VPSIDKVDKA SILSETIAYL KELERRVQEL ESGKKVSRPA  300
KRKPRSETII GGGGGGGGAG AVKEHHHWVL SESQEGTPSD VRVIVMDKDE LHLEVQCRWK  360
ELMMTRVFDA IKSLRLDVLS VQASAPDGLL GLKIRAKYAS SAAVVPAMIS ETLRTAVAGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247ERRRRE
2243248RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029080.0AP002908.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013G02.
GenBankAP0033100.0AP003310.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638350.10.0PREDICTED: anthocyanin regulatory R-S protein
SwissprotP135268e-99ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA2WRP90.0A2WRP9_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA003821-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.16e-41bHLH family protein